Variant report
Variant | rs12650206 |
---|---|
Chromosome Location | chr4:91974465-91974466 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10516885 | 0.81[CEU][hapmap];0.81[CHB][hapmap] |
rs1110741 | 0.84[EUR][1000 genomes] |
rs1110742 | 0.84[EUR][1000 genomes] |
rs12504169 | 0.84[EUR][1000 genomes] |
rs12508066 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12508842 | 0.80[CEU][hapmap] |
rs12509672 | 0.88[CEU][hapmap] |
rs12510441 | 0.82[CEU][hapmap] |
rs12640033 | 0.84[CEU][hapmap] |
rs13105627 | 0.85[CEU][hapmap] |
rs13106577 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rs13115351 | 0.81[CEU][hapmap] |
rs13133514 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rs1381293 | 1.00[CEU][hapmap] |
rs1461590 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1461594 | 0.92[CEU][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1461605 | 0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1531404 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2107007 | 0.82[CEU][hapmap] |
rs28580103 | 0.84[EUR][1000 genomes] |
rs28582898 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2870282 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs34059354 | 0.83[EUR][1000 genomes] |
rs35955130 | 0.84[CEU][hapmap];0.84[EUR][1000 genomes] |
rs4693255 | 0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs5009447 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6830306 | 0.84[CEU][hapmap];0.84[EUR][1000 genomes] |
rs6830699 | 0.83[EUR][1000 genomes] |
rs72667524 | 0.84[EUR][1000 genomes] |
rs898761 | 0.84[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv491945 | chr4:91753638-92240582 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv879559 | chr4:91918870-92152678 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv869023 | chr4:91940838-92935383 | Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
4 | esv2757943 | chr4:91946664-92146114 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | esv2759267 | chr4:91946664-92146114 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | nsv10534 | chr4:91966600-92009182 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:91972600-91985400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |