Variant report

Variant	rs1381293
Chromosome Location	chr4:91965312-91965313
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10030101	0.81[EUR][1000 genomes]
rs10516885	0.84[CEU][hapmap]
rs1110741	0.89[EUR][1000 genomes]
rs1110742	0.89[EUR][1000 genomes]
rs12504169	0.89[EUR][1000 genomes]
rs12508066	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12508842	0.84[CEU][hapmap]
rs12509672	0.92[CEU][hapmap]
rs12510441	0.85[CEU][hapmap]
rs12640033	0.88[CEU][hapmap]
rs12650206	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105627	0.88[CEU][hapmap]
rs13106577	1.00[CEU][hapmap]
rs13115351	0.84[CEU][hapmap]
rs13133514	1.00[CEU][hapmap]
rs1461590	0.88[EUR][1000 genomes]
rs1461594	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs1461605	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1531404	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2107007	0.85[CEU][hapmap]
rs28580103	0.89[EUR][1000 genomes]
rs28582898	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2870281	0.84[EUR][1000 genomes]
rs2870282	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34059354	0.88[EUR][1000 genomes]
rs34239566	0.84[EUR][1000 genomes]
rs35955130	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs4693255	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5009447	0.87[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62309843	0.81[EUR][1000 genomes]
rs6830306	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs6830699	0.88[EUR][1000 genomes]
rs72667524	0.89[EUR][1000 genomes]
rs898761	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv879559	chr4:91918870-92152678	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869023	chr4:91940838-92935383	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv2757943	chr4:91946664-92146114	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2759267	chr4:91946664-92146114	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links