Variant report

Variant	rs12650588
Chromosome Location	chr4:110697227-110697228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10027082	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10434000	0.91[AMR][1000 genomes]
rs11929767	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11932466	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11934594	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12645391	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12650933	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28855226	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4299582	0.91[AMR][1000 genomes]
rs57319600	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs884711	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110696600-110698600	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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