Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:110725244..110727161-chr4:110727468..110730412,2	MCF-7	breast:
2	chr4:110724812..110728911-chr4:110730126..110732446,4	K562	blood:
3	chr4:110721886..110724485-chr4:110725878..110728295,2	K562	blood:
4	chr4:110621205..110625752-chr4:110723387..110726377,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205403	Chromatin interaction
ENSG00000138794	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10000072	0.89[ASN][1000 genomes]
rs10000458	0.89[ASN][1000 genomes]
rs10004794	0.89[ASN][1000 genomes]
rs10011911	0.88[ASN][1000 genomes]
rs10024583	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10029485	0.89[ASN][1000 genomes]
rs10049642	0.88[ASN][1000 genomes]
rs10434000	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10434001	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461144	0.89[ASN][1000 genomes]
rs11932501	0.89[ASN][1000 genomes]
rs11932539	0.89[ASN][1000 genomes]
rs11932552	0.89[ASN][1000 genomes]
rs11937379	0.89[ASN][1000 genomes]
rs12650588	0.91[AMR][1000 genomes]
rs17040841	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28762207	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28785634	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28786383	0.89[ASN][1000 genomes]
rs28787106	0.89[ASN][1000 genomes]
rs28827596	0.89[ASN][1000 genomes]
rs28829108	0.89[ASN][1000 genomes]
rs28862613	0.89[ASN][1000 genomes]
rs28879996	0.89[ASN][1000 genomes]
rs4298142	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4698785	0.89[ASN][1000 genomes]
rs4698786	0.89[ASN][1000 genomes]
rs4698787	0.89[ASN][1000 genomes]
rs4698788	0.89[ASN][1000 genomes]
rs884711	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994162	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110722600-110736200	Weak transcription	Pancreas	Pancrea
2	chr4:110722800-110735800	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:110723800-110727200	Enhancers	HepG2	liver
4	chr4:110724400-110735800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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