Variant report

Variant	rs28785634
Chromosome Location	chr4:110718700-110718701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10000072	0.90[ASN][1000 genomes]
rs10000458	0.90[ASN][1000 genomes]
rs10004794	0.89[ASN][1000 genomes]
rs10011911	0.89[ASN][1000 genomes]
rs10024583	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027082	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10029485	0.89[ASN][1000 genomes]
rs10049642	0.89[ASN][1000 genomes]
rs10434000	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10434001	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10461144	0.89[ASN][1000 genomes]
rs11929767	0.82[AFR][1000 genomes]
rs11932466	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs11932501	0.90[ASN][1000 genomes]
rs11932539	0.90[ASN][1000 genomes]
rs11932552	0.90[ASN][1000 genomes]
rs11937379	0.90[ASN][1000 genomes]
rs12645391	0.82[AFR][1000 genomes]
rs12650933	0.94[AMR][1000 genomes]
rs17040841	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28762207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28786383	0.90[ASN][1000 genomes]
rs28787106	0.90[ASN][1000 genomes]
rs28827596	0.90[ASN][1000 genomes]
rs28829108	0.90[ASN][1000 genomes]
rs28855226	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs28862613	0.90[ASN][1000 genomes]
rs28879996	0.90[ASN][1000 genomes]
rs4298142	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4299582	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4698785	0.90[ASN][1000 genomes]
rs4698786	0.90[ASN][1000 genomes]
rs4698787	0.90[ASN][1000 genomes]
rs4698788	0.90[ASN][1000 genomes]
rs884711	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9994162	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv966307	chr4:110708883-110721699	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110715000-110718800	ZNF genes & repeats	HepG2	liver
2	chr4:110715000-110721200	Weak transcription	Pancreas	Pancrea
3	chr4:110717800-110721600	Weak transcription	Ovary	ovary
4	chr4:110718400-110719200	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links