Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:110645601..110647789-chr4:110720633..110722746,2	K562	blood:
2	chr4:110719468..110721145-chr4:110726862..110728503,2	K562	blood:
3	chr4:110622972..110624478-chr4:110719686..110721705,2	K562	blood:

Variant related genes	Relation type
ENSG00000138794	Chromatin interaction

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10000072	0.90[ASN][1000 genomes]
rs10000458	0.90[ASN][1000 genomes]
rs10004794	0.89[ASN][1000 genomes]
rs10011911	0.89[ASN][1000 genomes]
rs10029485	0.85[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs10049642	0.89[ASN][1000 genomes]
rs10434000	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10434001	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10461144	0.89[ASN][1000 genomes]
rs11932501	0.90[ASN][1000 genomes]
rs11932539	0.90[ASN][1000 genomes]
rs11932552	0.90[ASN][1000 genomes]
rs11937379	0.90[ASN][1000 genomes]
rs12508007	1.00[CEU][hapmap]
rs17040841	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17040920	1.00[CEU][hapmap]
rs28762207	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28785634	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28786383	0.90[ASN][1000 genomes]
rs28787106	0.90[ASN][1000 genomes]
rs28827596	0.90[ASN][1000 genomes]
rs28829108	0.90[ASN][1000 genomes]
rs28862613	0.90[ASN][1000 genomes]
rs28879996	0.90[ASN][1000 genomes]
rs4298142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4299582	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4698785	0.90[ASN][1000 genomes]
rs4698786	0.90[ASN][1000 genomes]
rs4698787	0.90[ASN][1000 genomes]
rs4698788	0.85[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4698790	0.81[CHB][hapmap]
rs884711	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9994162	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv966307	chr4:110708883-110721699	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110715000-110721200	Weak transcription	Pancreas	Pancrea
2	chr4:110717800-110721600	Weak transcription	Ovary	ovary
3	chr4:110720200-110721400	Flanking Active TSS	Liver	Liver
4	chr4:110720200-110722200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:110720400-110721400	Flanking Active TSS	HepG2	liver

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