Variant report

Variant	rs12652583
Chromosome Location	chr1:211062868-211062869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12652580	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12656774	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12658355	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13177228	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2247349	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2434517	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2560837	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2561234	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2561861	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2592041	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2592042	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2637153	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2932805	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs371028	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs371805	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs373575	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs377309	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs378330	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs379803	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs387793	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs398985	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs403174	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs410112	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs411918	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs415694	0.87[AMR][1000 genomes]
rs423247	0.86[ASN][1000 genomes]
rs423465	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs429234	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs434347	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs438138	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs439102	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs446224	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs447220	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs447562	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs447746	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs454031	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs588367	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs667563	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs676018	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs676852	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs685875	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs876095	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv4398	chr1:211034582-211079117	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211056800-211078800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:211058400-211077400	Weak transcription	HSMMtube	muscle
3	chr1:211058600-211067200	Weak transcription	HSMM	muscle

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