Variant report

Variant	rs12653617
Chromosome Location	chr5:98078561-98078562
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10043199	0.82[CHB][hapmap]
rs11950934	0.82[CHB][hapmap]
rs154197	0.82[CHB][hapmap]
rs17166344	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17674892	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs56926200	0.91[ASN][1000 genomes]
rs58631862	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032060	chr5:98022226-98093492	Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv537817	chr5:98022226-98093492	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98076800-98090600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:98077400-98078600	Enhancers	NHDF-Ad	bronchial
3	chr5:98077800-98078600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:98077800-98078800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:98077800-98078800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:98077800-98079000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:98078000-98079000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:98078000-98079000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr5:98078000-98079000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:98078200-98078600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:98078200-98078800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:98078200-98079000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:98078200-98079000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:98078400-98080400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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