Variant report

Variant	rs12653965
Chromosome Location	chr5:94337641-94337642
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10037916	0.81[EUR][1000 genomes]
rs12517172	0.85[AMR][1000 genomes]
rs7356576	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94319800-94346600	Weak transcription	HUVEC	blood vessel
2	chr5:94320400-94348000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:94326000-94339400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:94327000-94339200	Weak transcription	Primary T cells from cord blood	blood
5	chr5:94327200-94339000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:94334600-94339000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:94334800-94337800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:94334800-94353400	Weak transcription	Gastric	stomach
9	chr5:94334800-94358200	Weak transcription	Stomach Mucosa	stomach
10	chr5:94337000-94337800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr5:94337400-94337800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:94337400-94337800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr5:94337400-94339200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:94337400-94343200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:94337600-94338200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:94337600-94338200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr5:94337600-94341400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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