Variant report

Variant	rs10037916
Chromosome Location	chr5:94367407-94367408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10447214	0.85[GIH][hapmap]
rs10476532	0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs11135418	0.81[GIH][hapmap]
rs11135419	0.85[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs11952704	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12513499	0.80[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs12521630	0.86[ASW][hapmap];0.82[GIH][hapmap];0.83[YRI][hapmap]
rs12652623	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.88[LWK][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12653965	0.81[EUR][1000 genomes]
rs13156286	0.81[CHB][hapmap]
rs13181869	0.81[ASN][1000 genomes]
rs13359900	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1426100	0.81[GIH][hapmap]
rs17084368	1.00[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs28707160	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2881646	0.86[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.91[ASN][1000 genomes]
rs4988879	0.86[CHB][hapmap];0.89[CHD][hapmap]
rs59042491	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7356576	0.87[MEX][hapmap]
rs735989	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs737002	1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7729095	0.84[GIH][hapmap]
rs7730096	0.82[CHB][hapmap];0.86[CHD][hapmap];0.87[ASN][1000 genomes]
rs929989	0.81[GIH][hapmap]
rs958492	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94349000-94377800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:94362800-94369600	Enhancers	HUVEC	blood vessel
3	chr5:94364200-94371000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:94366400-94368600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:94366400-94369000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:94366400-94371800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:94366400-94374200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:94367200-94371600	Weak transcription	Monocytes-CD14+_RO01746	blood

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