Variant report

Variant	rs735989
Chromosome Location	chr5:94379036-94379037
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10037916	0.82[CHB][hapmap];0.86[CHD][hapmap];0.85[ASN][1000 genomes]
rs10476532	0.86[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs11135418	0.87[CHB][hapmap];0.91[CHD][hapmap];0.80[ASN][1000 genomes]
rs11135419	0.82[CHD][hapmap]
rs11738596	0.83[ASN][1000 genomes]
rs11742979	0.90[ASN][1000 genomes]
rs11745610	0.83[ASN][1000 genomes]
rs11747157	0.90[ASN][1000 genomes]
rs12514324	0.90[ASN][1000 genomes]
rs12652623	0.86[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs13156286	0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs13160664	0.87[CHB][hapmap];0.88[YRI][hapmap];0.80[ASN][1000 genomes]
rs13181869	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1426098	0.87[ASW][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1426100	0.91[CHB][hapmap];0.91[CHD][hapmap]
rs17084368	0.82[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2114194	0.82[ASW][hapmap];0.81[GIH][hapmap];0.84[LWK][hapmap];0.89[YRI][hapmap]
rs2194946	0.80[ASN][1000 genomes]
rs2347478	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs28707160	0.86[ASN][1000 genomes]
rs2881646	0.86[CHB][hapmap];0.81[CHD][hapmap];0.82[ASN][1000 genomes]
rs4869119	0.87[CHB][hapmap]
rs4869227	0.91[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.81[ASN][1000 genomes]
rs4869228	0.80[CEU][hapmap];0.91[CHB][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs6862790	0.84[CHD][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs737002	0.91[CHB][hapmap];0.89[CHD][hapmap];0.88[ASN][1000 genomes]
rs7729095	0.83[CHB][hapmap];0.84[CHD][hapmap]
rs7730096	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[ASN][1000 genomes]
rs929989	0.91[CHB][hapmap];0.91[CHD][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs735989	TTC37	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94377800-94382000	Enhancers	HUVEC	blood vessel
3	chr5:94378000-94379400	Weak transcription	Adipose Nuclei	Adipose
4	chr5:94378200-94380000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:94378200-94382000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr5:94378400-94380800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:94378400-94381200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:94378400-94381400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr5:94378600-94380200	Enhancers	Fetal Stomach	stomach
10	chr5:94378600-94380400	Enhancers	Primary hematopoietic stem cells	blood
11	chr5:94378600-94382200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr5:94378800-94379800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr5:94379000-94379200	Enhancers	Primary T cells from cord blood	blood
14	chr5:94379000-94379200	Enhancers	Gastric	stomach
15	chr5:94379000-94379400	Enhancers	GM12878-XiMat	blood
16	chr5:94379000-94379800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr5:94379000-94380400	Enhancers	Brain Anterior Caudate	brain
18	chr5:94379000-94380400	Enhancers	Psoas Muscle	Psoas

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