Variant report

Variant	rs7729095
Chromosome Location	chr5:94388470-94388471
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10037916	0.84[GIH][hapmap]
rs11135418	0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11135419	0.81[CHD][hapmap];0.92[GIH][hapmap]
rs13155160	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13156286	0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs13160664	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13181869	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs1426098	0.89[CHD][hapmap]
rs1426100	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1593464	0.90[CEU][hapmap]
rs2011547	0.96[ASN][1000 genomes]
rs2194946	0.90[ASN][1000 genomes]
rs2347478	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2881646	0.81[CHD][hapmap];0.90[GIH][hapmap]
rs4869119	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4869227	0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs4869228	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4988879	0.82[CHD][hapmap];0.81[ASN][1000 genomes]
rs6862790	0.87[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs735989	0.83[CHB][hapmap];0.84[CHD][hapmap]
rs737002	0.84[GIH][hapmap]
rs7728007	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730096	0.83[CHB][hapmap];0.84[CHD][hapmap]
rs929989	0.91[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7729095	CAST	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94385000-94393200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:94385000-94398200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:94385200-94395400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:94385400-94393200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:94385600-94404200	Weak transcription	HUVEC	blood vessel
7	chr5:94386600-94395000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:94386800-94393200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:94387600-94395200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:94388400-94393400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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