Variant report

Variant	rs4869227
Chromosome Location	chr5:94375346-94375347
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10068960	0.86[YRI][hapmap]
rs10463164	0.82[ASN][1000 genomes]
rs11135418	0.95[CHB][hapmap];0.98[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs11747168	0.82[ASN][1000 genomes]
rs13155160	0.93[ASN][1000 genomes]
rs13156286	1.00[CHB][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes]
rs13160664	0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs13163860	0.81[ASN][1000 genomes]
rs13181869	0.81[CHB][hapmap]
rs1426100	1.00[CHB][hapmap];0.98[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.97[ASN][1000 genomes]
rs1593464	0.82[ASN][1000 genomes]
rs17084368	0.82[GIH][hapmap]
rs2011547	0.89[ASN][1000 genomes]
rs2114194	0.88[CEU][hapmap];0.98[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2194946	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2347478	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs4869119	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4869228	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs4988879	0.86[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.89[ASN][1000 genomes]
rs6862790	0.86[CHB][hapmap];0.91[CHD][hapmap];0.88[ASN][1000 genomes]
rs735989	0.91[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap]
rs737002	0.82[CHB][hapmap]
rs7728007	0.92[ASN][1000 genomes]
rs7729095	0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7730096	0.91[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.82[TSI][hapmap];0.81[ASN][1000 genomes]
rs929989	1.00[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94349000-94377800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:94369400-94378200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr5:94372800-94375600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:94372800-94375800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr5:94372800-94377600	Weak transcription	Stomach Mucosa	stomach
6	chr5:94372800-94379000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:94374800-94378600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:94375000-94376200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr5:94375000-94378400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:94375200-94377800	Weak transcription	HUVEC	blood vessel

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