Variant report

Variant	rs1426100
Chromosome Location	chr5:94365306-94365307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10037916	0.81[GIH][hapmap]
rs10463164	0.82[ASN][1000 genomes]
rs11135418	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11747168	0.82[ASN][1000 genomes]
rs12652623	0.81[CHD][hapmap]
rs13155160	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13156286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13160664	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13163860	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13181869	0.81[CHB][hapmap]
rs1426098	0.82[CHD][hapmap]
rs1593464	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17084368	0.81[CHD][hapmap]
rs2011547	0.86[ASN][1000 genomes]
rs2114194	0.80[ASN][1000 genomes]
rs2194946	0.99[ASN][1000 genomes]
rs2347478	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4869119	0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4869227	1.00[CHB][hapmap];0.98[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.97[ASN][1000 genomes]
rs4869228	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4988879	0.86[CHB][hapmap];0.89[CHD][hapmap];0.86[ASN][1000 genomes]
rs6862790	0.86[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs735989	0.91[CHB][hapmap];0.91[CHD][hapmap]
rs737002	0.82[CHB][hapmap];0.81[CHD][hapmap];0.81[GIH][hapmap]
rs7728007	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7729095	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7730096	0.91[CHB][hapmap];0.91[CHD][hapmap];0.81[ASN][1000 genomes]
rs929989	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94349000-94377800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:94362200-94366400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:94362800-94369600	Enhancers	HUVEC	blood vessel
4	chr5:94363600-94366400	Enhancers	Primary hematopoietic stem cells	blood
5	chr5:94363800-94365400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:94363800-94365600	Weak transcription	Thymus	Thymus
7	chr5:94363800-94367000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:94363800-94367200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:94363800-94367200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr5:94364200-94366000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:94364200-94371000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:94365000-94366000	Enhancers	Primary T cells from cord blood	blood
13	chr5:94365200-94365400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:94365200-94365400	Enhancers	HSMM	muscle
15	chr5:94365200-94365800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:94365200-94365800	Enhancers	Adipose Nuclei	Adipose
17	chr5:94365200-94365800	Enhancers	Lung	lung
18	chr5:94365200-94366000	Enhancers	Fetal Thymus	thymus
19	chr5:94365200-94366000	Flanking Active TSS	GM12878-XiMat	blood
20	chr5:94365200-94366400	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links