Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10037916	1.00[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs10476532	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11135418	0.81[CHD][hapmap]
rs11135419	0.85[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs11952704	0.81[ASN][1000 genomes]
rs12513499	0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs12652623	0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs13156286	0.85[CHB][hapmap]
rs13181869	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs13359900	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs1426098	0.83[GIH][hapmap];0.81[JPT][hapmap]
rs1426100	0.81[CHD][hapmap]
rs2114194	0.82[GIH][hapmap]
rs28707160	0.98[ASN][1000 genomes]
rs2881646	0.86[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4869227	0.82[GIH][hapmap]
rs4988879	0.90[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.80[MEX][hapmap];0.81[ASN][1000 genomes]
rs59042491	0.90[ASN][1000 genomes]
rs735989	0.82[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap]
rs737002	0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs7730096	0.82[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs929989	0.80[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17084368	GPR98	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94349000-94377800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:94366400-94374200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:94369400-94378200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:94369600-94373000	Weak transcription	HUVEC	blood vessel
5	chr5:94371000-94372800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:94371600-94372000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:94371600-94372200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:94371600-94372800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:94371800-94372000	Enhancers	Stomach Mucosa	stomach
10	chr5:94371800-94372200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:94371800-94372200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr5:94371800-94372400	Active TSS	Osteobl	bone
13	chr5:94371800-94372800	Enhancers	Primary monocytes fromperipheralblood	blood

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