Variant report

Variant	rs13359900
Chromosome Location	chr5:94391765-94391766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10037916	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10476532	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs11135419	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs11742979	0.86[ASN][1000 genomes]
rs11747157	0.86[ASN][1000 genomes]
rs12513499	1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[ASN][1000 genomes]
rs12514324	0.87[ASN][1000 genomes]
rs12521630	1.00[YRI][hapmap]
rs12652623	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs13181869	0.83[ASN][1000 genomes]
rs1426098	0.86[CHB][hapmap];0.88[ASN][1000 genomes]
rs17084368	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs28707160	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2881646	0.86[CHB][hapmap];0.81[JPT][hapmap];0.94[ASN][1000 genomes]
rs59042491	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs737002	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94385000-94393200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:94385000-94398200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:94385200-94395400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:94385400-94393200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:94385600-94404200	Weak transcription	HUVEC	blood vessel
7	chr5:94386600-94395000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:94386800-94393200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:94387600-94395200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:94388400-94393400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:94391000-94395400	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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