Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10037916	0.85[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs10476532	0.80[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11738596	0.80[EUR][1000 genomes]
rs11742979	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11745610	0.80[EUR][1000 genomes]
rs11747157	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12513499	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs12514324	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12652623	0.80[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs13181869	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13359900	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1426098	0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs17084368	0.85[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs28707160	0.89[ASN][1000 genomes]
rs2881646	0.82[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs4988879	0.84[CHD][hapmap]
rs59042491	0.99[ASN][1000 genomes]
rs6862790	0.81[CHD][hapmap]
rs735989	0.82[CHD][hapmap]
rs737002	0.93[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs7729095	0.81[CHD][hapmap];0.92[GIH][hapmap]
rs7730096	0.82[CHD][hapmap]
rs919060	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94377800-94382000	Enhancers	HUVEC	blood vessel
3	chr5:94378200-94382000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:94378400-94380800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:94378400-94381200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:94378400-94381400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:94378600-94380400	Enhancers	Primary hematopoietic stem cells	blood
8	chr5:94378600-94382200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:94379000-94380400	Enhancers	Brain Anterior Caudate	brain
10	chr5:94379000-94380400	Enhancers	Psoas Muscle	Psoas
11	chr5:94379200-94382800	Weak transcription	Gastric	stomach
12	chr5:94379400-94380600	Enhancers	Adipose Nuclei	Adipose
13	chr5:94379400-94380800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr5:94379600-94380600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:94379800-94381800	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr5:94380000-94380400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search: