Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10476532	0.81[JPT][hapmap]
rs11135418	0.82[CHD][hapmap]
rs11135419	0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs11742979	0.99[ASN][1000 genomes]
rs11747157	0.99[ASN][1000 genomes]
rs11750512	0.86[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12513499	0.86[CHB][hapmap];0.88[ASN][1000 genomes]
rs12514324	0.99[ASN][1000 genomes]
rs12652623	0.81[JPT][hapmap]
rs13160664	0.85[YRI][hapmap]
rs13181869	0.86[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs13359900	0.86[CHB][hapmap];0.88[ASN][1000 genomes]
rs1426100	0.82[CHD][hapmap]
rs169822	0.86[CEU][hapmap];0.81[MEX][hapmap]
rs17084368	0.83[GIH][hapmap];0.81[JPT][hapmap]
rs2011547	0.81[ASN][1000 genomes]
rs2114194	0.85[YRI][hapmap]
rs2347478	0.81[CHB][hapmap]
rs2881646	0.81[CHB][hapmap];0.86[CHD][hapmap];0.83[ASN][1000 genomes]
rs4869119	0.82[CHB][hapmap]
rs4869228	0.88[YRI][hapmap]
rs59042491	0.87[ASN][1000 genomes]
rs6862790	0.91[CHB][hapmap];0.89[CHD][hapmap];0.94[LWK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs735989	0.87[ASW][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];0.96[YRI][hapmap]
rs7729095	0.89[CHD][hapmap]
rs7730096	0.87[ASW][hapmap];0.93[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs929989	0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1426098	GPR150	cis	cerebellum	SCAN
rs1426098	C5orf27	cis	parietal	SCAN
rs1426098	TTC37	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94385000-94393200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:94385000-94398200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:94385200-94395400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:94385400-94393200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:94385600-94404200	Weak transcription	HUVEC	blood vessel
7	chr5:94386600-94395000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:94386800-94393200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:94387600-94395200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:94388400-94393400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:94391000-94395400	Weak transcription	GM12878-XiMat	blood

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