Variant report

Variant	rs2114194
Chromosome Location	chr5:94353905-94353906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10037097	0.87[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs10075321	0.88[ASN][1000 genomes]
rs10463164	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11135418	0.81[ASN][1000 genomes]
rs11747168	0.99[ASN][1000 genomes]
rs12658252	0.90[ASN][1000 genomes]
rs13160664	0.81[ASN][1000 genomes]
rs13163860	0.97[ASN][1000 genomes]
rs1426098	0.85[YRI][hapmap]
rs1426100	0.80[ASN][1000 genomes]
rs1593464	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs17084368	0.82[GIH][hapmap]
rs2194946	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2347478	0.80[ASN][1000 genomes]
rs4869227	0.88[CEU][hapmap];0.98[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4869228	0.80[YRI][hapmap]
rs4988879	0.91[GIH][hapmap]
rs6862790	0.89[YRI][hapmap]
rs72777373	0.89[ASN][1000 genomes]
rs735989	0.82[ASW][hapmap];0.81[GIH][hapmap];0.84[LWK][hapmap];0.89[YRI][hapmap]
rs7730096	0.89[GIH][hapmap];0.85[YRI][hapmap]
rs929989	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2114194	GPR98	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94334800-94358200	Weak transcription	Stomach Mucosa	stomach
2	chr5:94340800-94362800	Weak transcription	Thymus	Thymus
3	chr5:94340800-94363000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:94344200-94363400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:94348400-94358000	Weak transcription	Dnd41	blood
6	chr5:94348800-94354800	Weak transcription	GM12878-XiMat	blood
7	chr5:94349000-94363000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:94349000-94377800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:94349800-94355800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:94350200-94358200	Weak transcription	Primary T cells from cord blood	blood
11	chr5:94350600-94358800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:94351800-94355200	Strong transcription	HUVEC	blood vessel
13	chr5:94352600-94363200	Weak transcription	Adipose Nuclei	Adipose
14	chr5:94352800-94362800	Weak transcription	Primary B cells from cord blood	blood
15	chr5:94353000-94354200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:94353000-94354600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:94353000-94354600	Weak transcription	HMEC	breast
18	chr5:94353200-94354400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr5:94353200-94355200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr5:94353200-94355400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr5:94353200-94355600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr5:94353200-94358400	Weak transcription	Fetal Thymus	thymus
23	chr5:94353200-94358800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:94353200-94362800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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