Variant report

Variant	rs6862790
Chromosome Location	chr5:94380775-94380776
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11135418	0.82[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs11135419	0.81[CHD][hapmap]
rs11742979	0.80[ASN][1000 genomes]
rs11747157	0.80[ASN][1000 genomes]
rs13155160	0.94[ASN][1000 genomes]
rs13156286	0.85[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs13160664	0.82[CHB][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap];0.86[ASN][1000 genomes]
rs1426098	0.91[CHB][hapmap];0.89[CHD][hapmap];0.94[LWK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs1426100	0.86[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs2011547	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2114194	0.89[YRI][hapmap]
rs2194946	0.86[ASN][1000 genomes]
rs2347478	0.90[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs2881646	0.81[CHD][hapmap]
rs4869119	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4869227	0.86[CHB][hapmap];0.91[CHD][hapmap];0.88[ASN][1000 genomes]
rs4869228	0.96[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4988879	0.82[CHD][hapmap]
rs735989	0.84[CHD][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap]
rs7728007	0.93[ASN][1000 genomes]
rs7729095	0.87[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs7730096	0.84[CHD][hapmap];0.96[YRI][hapmap]
rs929989	0.86[CHB][hapmap];0.91[CHD][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94377800-94382000	Enhancers	HUVEC	blood vessel
3	chr5:94378200-94382000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:94378400-94380800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:94378400-94381200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:94378400-94381400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:94378600-94382200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:94379200-94382800	Weak transcription	Gastric	stomach
9	chr5:94379400-94380800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr5:94379800-94381800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr5:94380400-94384000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:94380600-94384200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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