Variant report

Variant	rs11135418
Chromosome Location	chr5:94366599-94366600
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10037916	0.81[GIH][hapmap]
rs10463164	0.83[ASN][1000 genomes]
rs11747168	0.83[ASN][1000 genomes]
rs12652623	0.81[CHD][hapmap]
rs13155160	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13156286	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13160664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163860	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13181869	0.86[CHB][hapmap]
rs1426098	0.82[CHD][hapmap]
rs1426100	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1593464	0.81[CEU][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17084368	0.81[CHD][hapmap]
rs2011547	0.88[ASN][1000 genomes]
rs2114194	0.81[ASN][1000 genomes]
rs2194946	1.00[ASN][1000 genomes]
rs2347478	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4869119	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4869227	0.95[CHB][hapmap];0.98[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs4869228	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4988879	0.82[CHB][hapmap];0.89[CHD][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs6862790	0.82[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs735989	0.87[CHB][hapmap];0.91[CHD][hapmap]
rs737002	0.81[CHD][hapmap];0.81[GIH][hapmap]
rs7728007	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7729095	0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7730096	0.87[CHB][hapmap];0.91[CHD][hapmap];0.82[ASN][1000 genomes]
rs929989	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94349000-94377800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:94362800-94369600	Enhancers	HUVEC	blood vessel
3	chr5:94363800-94367000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:94363800-94367200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:94363800-94367200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr5:94364200-94371000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:94366200-94367200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:94366400-94368600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr5:94366400-94369000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:94366400-94371800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr5:94366400-94374200	Weak transcription	Primary hematopoietic stem cells	blood

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