Variant report

Variant	rs12652623
Chromosome Location	chr5:94377639-94377640
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10037916	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.88[LWK][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10476532	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11135418	0.81[CHD][hapmap]
rs11135419	0.80[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs11952704	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12513499	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs13156286	0.86[CHB][hapmap]
rs13181869	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs13359900	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1426098	0.81[JPT][hapmap]
rs1426100	0.81[CHD][hapmap]
rs17084368	0.95[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs28707160	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2881646	0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.94[ASN][1000 genomes]
rs4988879	0.91[CHB][hapmap];0.91[CHD][hapmap];0.82[ASN][1000 genomes]
rs59042491	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7356576	0.81[MEX][hapmap]
rs735989	0.86[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap]
rs737002	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730096	0.86[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs929989	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94349000-94377800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:94369400-94378200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr5:94372800-94379000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:94374800-94378600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94375000-94378400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:94375200-94377800	Weak transcription	HUVEC	blood vessel
7	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:94376600-94378200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr5:94376600-94378400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:94376600-94378600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr5:94376600-94379000	Weak transcription	Primary T cells from cord blood	blood
12	chr5:94377600-94378200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr5:94377600-94378200	Enhancers	Hela-S3	cervix
14	chr5:94377600-94378400	Enhancers	Stomach Mucosa	stomach

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