Variant report

Variant	rs28707160
Chromosome Location	chr5:94363920-94363921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10037916	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10476532	0.97[ASN][1000 genomes]
rs11135419	0.89[ASN][1000 genomes]
rs11952704	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12513499	0.88[ASN][1000 genomes]
rs12652623	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13181869	0.82[ASN][1000 genomes]
rs13359900	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17084368	0.98[ASN][1000 genomes]
rs2881646	0.92[ASN][1000 genomes]
rs59042491	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs737002	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7730096	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94349000-94377800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:94362200-94366400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:94362400-94364000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:94362800-94364000	Enhancers	Primary B cells from cord blood	blood
5	chr5:94362800-94364200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:94362800-94364200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:94362800-94364200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:94362800-94364400	Enhancers	Dnd41	blood
9	chr5:94362800-94369600	Enhancers	HUVEC	blood vessel
10	chr5:94363200-94364000	Enhancers	Osteobl	bone
11	chr5:94363200-94364200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:94363200-94364200	Enhancers	Adipose Nuclei	Adipose
13	chr5:94363400-94364200	Enhancers	Primary T cells from cord blood	blood
14	chr5:94363600-94366400	Enhancers	Primary hematopoietic stem cells	blood
15	chr5:94363800-94365200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:94363800-94365200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr5:94363800-94365200	Weak transcription	Fetal Thymus	thymus
18	chr5:94363800-94365200	Enhancers	GM12878-XiMat	blood
19	chr5:94363800-94365400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr5:94363800-94365600	Weak transcription	Thymus	Thymus
21	chr5:94363800-94367000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr5:94363800-94367200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr5:94363800-94367200	Enhancers	Monocytes-CD14+_RO01746	blood

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