Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10061397	0.86[CHB][hapmap]
rs10067664	0.95[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.89[ASN][1000 genomes]
rs10068960	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10070518	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1019658	0.81[CHB][hapmap]
rs10447214	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs11742979	0.82[ASN][1000 genomes]
rs11744187	0.85[CHB][hapmap]
rs11746442	0.86[CHB][hapmap]
rs11747157	0.82[ASN][1000 genomes]
rs11960652	0.86[CHB][hapmap];0.81[CHD][hapmap];0.82[YRI][hapmap]
rs12514324	0.83[ASN][1000 genomes]
rs12521630	0.81[CHB][hapmap]
rs1426089	0.81[CHB][hapmap]
rs1426098	0.86[JPT][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1559798	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs1974960	0.81[CHB][hapmap]
rs2217061	0.86[CHB][hapmap]
rs4869230	0.89[ASN][1000 genomes]
rs4869231	0.81[CHB][hapmap]
rs6860673	0.81[CHB][hapmap]
rs6862865	0.81[CHB][hapmap];0.81[CHD][hapmap]
rs6863964	0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[ASN][1000 genomes]
rs6865589	0.86[CHB][hapmap]
rs958492	0.86[CHB][hapmap];0.80[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11750512	TTC37	cis	cerebellum	SCAN
rs11750512	GPR150	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94385000-94398200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:94385200-94395400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:94385600-94404200	Weak transcription	HUVEC	blood vessel
5	chr5:94391000-94395400	Weak transcription	GM12878-XiMat	blood
6	chr5:94393400-94395600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:94394000-94396600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:94394200-94395400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr5:94394200-94395400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:94394200-94398200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:94394600-94398000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:94395000-94396200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr5:94395000-94396400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr5:94395200-94396400	Enhancers	Primary neutrophils fromperipheralblood	blood

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