Variant report

Variant	rs1974960
Chromosome Location	chr5:94407021-94407022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10060235	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10061397	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10067664	0.84[CHD][hapmap];0.83[GIH][hapmap]
rs10068960	0.81[CHB][hapmap]
rs10070518	0.81[CHB][hapmap]
rs1019658	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10447214	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11744187	0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11746442	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11750512	0.81[CHB][hapmap]
rs12521630	0.89[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1426089	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.91[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1559798	0.84[ASN][1000 genomes]
rs2217061	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.93[MKK][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2881646	0.82[GIH][hapmap]
rs4869230	0.82[ASN][1000 genomes]
rs4869231	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6860673	0.89[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6862865	0.81[GIH][hapmap]
rs6863964	0.82[CHD][hapmap];0.86[GIH][hapmap]
rs6865589	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6892381	0.83[AMR][1000 genomes]
rs7733741	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs919060	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9314125	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs958492	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94399800-94411400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:94403400-94408000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:94404000-94407600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:94404600-94416200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:94404800-94412200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:94404800-94414600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:94406000-94409200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:94406200-94408000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr5:94406600-94412000	Weak transcription	Brain Anterior Caudate	brain
10	chr5:94406600-94413600	Weak transcription	Dnd41	blood
11	chr5:94406600-94415800	Weak transcription	Fetal Stomach	stomach
12	chr5:94406800-94410000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr5:94406800-94410600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:94407000-94407400	Weak transcription	Primary B cells from cord blood	blood
15	chr5:94407000-94408000	Weak transcription	HUVEC	blood vessel
16	chr5:94407000-94408200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr5:94407000-94408800	Enhancers	GM12878-XiMat	blood
18	chr5:94407000-94409000	Weak transcription	Lung	lung
19	chr5:94407000-94410600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:94407000-94412200	Weak transcription	Adipose Nuclei	Adipose
21	chr5:94407000-94417200	Weak transcription	Gastric	stomach
22	chr5:94407000-94423600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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