Variant report

Variant	rs2217061
Chromosome Location	chr5:94420050-94420051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94416961..94418914-chr5:94419961..94422376,2	K562	blood:

Variant related genes	Relation type
ENSG00000175471	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10060235	0.96[ASN][1000 genomes]
rs10061397	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10067664	0.81[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap]
rs10068960	0.86[CHB][hapmap]
rs10070518	0.86[CHB][hapmap]
rs1019658	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10447214	0.84[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11744187	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11746442	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11750512	0.86[CHB][hapmap]
rs12521630	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1426089	1.00[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1559798	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs1974960	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.93[MKK][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2881646	0.82[GIH][hapmap]
rs4869231	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6860673	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6862865	0.81[GIH][hapmap]
rs6863964	0.81[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap]
rs6865589	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs6892381	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7733741	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs919060	0.90[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs9314125	0.90[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs958492	1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94407000-94423600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94417800-94420600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:94418000-94420400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:94418000-94422600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:94418000-94422600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:94418000-94423400	Weak transcription	Fetal Stomach	stomach
7	chr5:94418200-94420200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:94418200-94420400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:94418200-94420400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:94418200-94420400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:94418200-94422600	Weak transcription	Primary B cells from cord blood	blood
12	chr5:94418600-94420200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:94418600-94422200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr5:94418600-94422400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:94418600-94422600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr5:94418600-94422600	Weak transcription	Dnd41	blood
17	chr5:94418800-94420800	Enhancers	A549	lung
18	chr5:94419800-94420800	Enhancers	HUVEC	blood vessel
19	chr5:94419800-94421800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr5:94419800-94422400	Weak transcription	Primary hematopoietic stem cells	blood

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