Variant report

Variant	rs10447214
Chromosome Location	chr5:94400405-94400406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10037916	0.85[GIH][hapmap]
rs10060235	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10061397	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10067664	0.88[CHD][hapmap];0.90[GIH][hapmap];0.83[ASN][1000 genomes]
rs10068960	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs10070518	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs1019658	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs11744187	0.84[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs11746442	0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs11750512	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs12513499	0.85[AFR][1000 genomes]
rs12521630	1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1426089	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1559798	0.80[ASN][1000 genomes]
rs1974960	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2217061	0.84[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2881646	0.81[ASW][hapmap];0.80[GIH][hapmap]
rs4869230	0.84[ASN][1000 genomes]
rs4869231	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6860673	0.89[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs6862865	0.80[CHD][hapmap]
rs6863964	0.86[CHD][hapmap];0.93[GIH][hapmap];0.81[ASN][1000 genomes]
rs6865589	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs737002	0.85[GIH][hapmap]
rs7733741	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs919060	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9314125	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs958492	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94385600-94404200	Weak transcription	HUVEC	blood vessel
3	chr5:94396200-94401600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:94396400-94401800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr5:94396800-94403800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:94396800-94404000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:94397600-94403800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:94398200-94404800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:94399800-94404200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:94399800-94411400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:94400000-94404600	Weak transcription	Brain Anterior Caudate	brain
12	chr5:94400000-94405800	Weak transcription	Fetal Stomach	stomach

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