Variant report

Variant	rs12521630
Chromosome Location	chr5:94398330-94398331
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10037916	0.86[ASW][hapmap];0.82[GIH][hapmap];0.83[YRI][hapmap]
rs10060235	0.83[ASN][1000 genomes]
rs10061397	0.84[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10067664	0.86[CHD][hapmap];0.88[GIH][hapmap];0.83[ASN][1000 genomes]
rs10068960	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs10070518	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs1019658	0.89[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10447214	1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11744187	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11746442	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11750512	0.81[CHB][hapmap]
rs13359900	1.00[YRI][hapmap]
rs1426089	0.89[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1974960	0.89[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2217061	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4869230	0.83[ASN][1000 genomes]
rs4869231	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6860673	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs6863964	0.84[CHD][hapmap];0.90[GIH][hapmap];0.80[ASN][1000 genomes]
rs6865589	0.84[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs6892381	1.00[CEU][hapmap]
rs737002	0.82[GIH][hapmap]
rs7733741	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs919060	0.95[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs9314125	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs958492	0.84[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756469	chr5:94323268-94400017	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94376200-94405800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94385600-94404200	Weak transcription	HUVEC	blood vessel
3	chr5:94396200-94401600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:94396400-94401800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr5:94396800-94403800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:94396800-94404000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:94397600-94403800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:94398000-94399800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:94398200-94399800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:94398200-94399800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:94398200-94400000	Enhancers	Fetal Stomach	stomach
12	chr5:94398200-94404800	Weak transcription	Muscle Satellite Cultured Cells	--

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