Variant report

Variant	rs12654986
Chromosome Location	chr5:42354375-42354376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10054119	0.86[ASN][1000 genomes]
rs12514403	0.82[AMR][1000 genomes]
rs12515480	0.82[AMR][1000 genomes]
rs12517368	0.82[AMR][1000 genomes]
rs12518010	0.82[AMR][1000 genomes]
rs12518274	0.82[AMR][1000 genomes]
rs12522222	0.82[AMR][1000 genomes]
rs12522421	0.82[AMR][1000 genomes]
rs1509462	0.82[AMR][1000 genomes]
rs1509463	0.82[AMR][1000 genomes]
rs16872537	0.82[AMR][1000 genomes]
rs16872543	0.82[AMR][1000 genomes]
rs16872564	0.82[AMR][1000 genomes]
rs1876789	0.88[ASN][1000 genomes]
rs1979994	0.82[AMR][1000 genomes]
rs28498583	0.82[AMR][1000 genomes]
rs28943875	0.82[AMR][1000 genomes]
rs28943877	0.82[AMR][1000 genomes]
rs34813199	0.88[ASN][1000 genomes]
rs4866781	0.82[AMR][1000 genomes]
rs4866782	0.82[AMR][1000 genomes]
rs4866795	0.82[AMR][1000 genomes]
rs4866896	0.82[AMR][1000 genomes]
rs4866901	0.82[AMR][1000 genomes]
rs4866932	0.82[AMR][1000 genomes]
rs4866933	0.82[AMR][1000 genomes]
rs4866935	0.82[AMR][1000 genomes]
rs58179197	0.82[AMR][1000 genomes]
rs949559	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv880518	chr5:42231896-42375243	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv881375	chr5:42254097-42442715	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv948514	chr5:42270161-42519262	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42354000-42354400	Weak transcription	Aorta	Aorta

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