Variant report
Variant | rs12518010 |
---|---|
Chromosome Location | chr5:42448471-42448472 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10064323 | 0.89[ASN][1000 genomes] |
rs10941576 | 0.89[ASN][1000 genomes] |
rs1117110 | 0.98[ASN][1000 genomes] |
rs11738365 | 0.98[ASN][1000 genomes] |
rs12513643 | 0.91[ASN][1000 genomes] |
rs12514403 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12515480 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12517368 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12517931 | 0.91[ASN][1000 genomes] |
rs12518274 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12520318 | 0.91[ASN][1000 genomes] |
rs12522222 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12522421 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12523537 | 0.89[ASN][1000 genomes] |
rs12654242 | 0.86[ASN][1000 genomes] |
rs12654986 | 0.82[AMR][1000 genomes] |
rs13185872 | 0.89[ASN][1000 genomes] |
rs1396768 | 0.98[ASN][1000 genomes] |
rs1396775 | 0.89[ASN][1000 genomes] |
rs1472947 | 0.89[ASN][1000 genomes] |
rs1509455 | 0.98[ASN][1000 genomes] |
rs1509456 | 0.98[ASN][1000 genomes] |
rs1509460 | 0.96[ASN][1000 genomes] |
rs1509462 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1509463 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1605851 | 0.95[ASN][1000 genomes] |
rs16872537 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs16872543 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs16872564 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1858136 | 0.98[ASN][1000 genomes] |
rs1858138 | 0.91[ASN][1000 genomes] |
rs1876790 | 0.93[ASN][1000 genomes] |
rs1960498 | 0.98[ASN][1000 genomes] |
rs1979994 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2036745 | 0.96[ASN][1000 genomes] |
rs2202883 | 0.98[ASN][1000 genomes] |
rs2221712 | 0.98[ASN][1000 genomes] |
rs2395970 | 0.98[ASN][1000 genomes] |
rs28498583 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28943875 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28943877 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs28943879 | 0.87[ASN][1000 genomes] |
rs2940912 | 0.89[ASN][1000 genomes] |
rs2940914 | 0.98[ASN][1000 genomes] |
rs2940917 | 0.96[ASN][1000 genomes] |
rs2940918 | 0.90[ASN][1000 genomes] |
rs2940919 | 0.96[ASN][1000 genomes] |
rs2940922 | 0.96[ASN][1000 genomes] |
rs2940923 | 0.95[ASN][1000 genomes] |
rs2940927 | 0.91[ASN][1000 genomes] |
rs2940934 | 0.98[ASN][1000 genomes] |
rs2940940 | 0.91[ASN][1000 genomes] |
rs2940945 | 0.91[ASN][1000 genomes] |
rs2972394 | 0.89[ASN][1000 genomes] |
rs2972406 | 0.98[ASN][1000 genomes] |
rs2972407 | 0.98[ASN][1000 genomes] |
rs2972408 | 0.95[ASN][1000 genomes] |
rs2972410 | 0.96[ASN][1000 genomes] |
rs2972411 | 0.96[ASN][1000 genomes] |
rs2972412 | 0.96[ASN][1000 genomes] |
rs2972413 | 0.96[ASN][1000 genomes] |
rs2972414 | 0.84[ASN][1000 genomes] |
rs34069689 | 1.00[EUR][1000 genomes] |
rs3764453 | 0.93[ASN][1000 genomes] |
rs4358532 | 0.84[ASN][1000 genomes] |
rs4866781 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4866782 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4866785 | 1.00[EUR][1000 genomes] |
rs4866788 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4866790 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4866795 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs4866896 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs4866901 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs4866919 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4866932 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4866933 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4866935 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs58179197 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6451621 | 0.81[ASN][1000 genomes] |
rs906817 | 0.91[ASN][1000 genomes] |
rs949559 | 0.98[AMR][1000 genomes] |
rs9686537 | 0.89[ASN][1000 genomes] |
rs9687863 | 0.86[ASN][1000 genomes] |
rs979233 | 0.89[ASN][1000 genomes] |
rs991592 | 0.89[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv933208 | chr5:41879946-42876624 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 112 gene(s) | inside rSNPs | diseases |
2 | nsv492147 | chr5:41902086-42896162 | Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 113 gene(s) | inside rSNPs | diseases |
3 | nsv948514 | chr5:42270161-42519262 | Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:42437000-42449600 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
2 | chr5:42443600-42453400 | Weak transcription | Liver | Liver |
3 | chr5:42446400-42453600 | Weak transcription | Right Ventricle | heart |