The 2.0 version of rSNPBase

Variant report

Variant rs28943879
Chromosome Location chr5:42495882-42495883
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:30 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:42490600-42499200 Weak transcription Pancreas Pancrea
2 chr5:42490800-42496000 Weak transcription Psoas Muscle Psoas
3 chr5:42490800-42499200 Weak transcription Left Ventricle heart
4 chr5:42491800-42496400 Weak transcription Stomach Smooth Muscle stomach
5 chr5:42492000-42499200 Weak transcription Right Atrium heart
6 chr5:42492200-42496200 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr5:42492200-42496600 Weak transcription Liver Liver
8 chr5:42492200-42499200 Weak transcription Fetal Muscle Leg muscle
9 chr5:42492200-42499200 Weak transcription Ovary ovary
10 chr5:42493000-42496200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr5:42493200-42499800 Weak transcription Fetal Lung lung
12 chr5:42493800-42496000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr5:42494000-42498400 Enhancers Fetal Heart heart
14 chr5:42494200-42496600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr5:42494200-42496800 Enhancers NHEK skin
16 chr5:42494400-42496800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr5:42494600-42496400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
18 chr5:42494600-42499000 Weak transcription Adipose Nuclei Adipose
19 chr5:42494800-42496000 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr5:42494800-42497200 Enhancers Colon Smooth Muscle Colon
21 chr5:42495200-42497000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr5:42495200-42500000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr5:42495400-42497600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr5:42495800-42496200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr5:42495800-42496400 Enhancers HSMMtube muscle
26 chr5:42495800-42496600 Enhancers Rectal Smooth Muscle rectum
27 chr5:42495800-42496800 Enhancers HMEC breast
28 chr5:42495800-42497200 Enhancers Breast Myoepithelial Primary Cells Breast
29 chr5:42495800-42497600 Enhancers Skeletal Muscle Male skeletal muscle
30 chr5:42495800-42499200 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015