Variant report

Variant	rs2940934
Chromosome Location	chr5:42450081-42450082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10064323	0.91[ASN][1000 genomes]
rs10755268	0.92[EUR][1000 genomes]
rs10941576	0.91[ASN][1000 genomes]
rs1117110	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11738365	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11742495	0.97[EUR][1000 genomes]
rs11747975	0.97[EUR][1000 genomes]
rs11748366	0.92[EUR][1000 genomes]
rs11957616	0.91[EUR][1000 genomes]
rs12513643	0.89[ASN][1000 genomes]
rs12515480	0.96[ASN][1000 genomes]
rs12517368	0.96[ASN][1000 genomes]
rs12517931	0.89[ASN][1000 genomes]
rs12518010	0.98[ASN][1000 genomes]
rs12518274	0.96[ASN][1000 genomes]
rs12520318	0.89[ASN][1000 genomes]
rs12522222	0.98[ASN][1000 genomes]
rs12522421	0.98[ASN][1000 genomes]
rs12523537	0.91[ASN][1000 genomes]
rs12654242	0.87[ASN][1000 genomes]
rs13162973	0.92[EUR][1000 genomes]
rs13166255	0.81[ASN][1000 genomes]
rs13185872	0.91[ASN][1000 genomes]
rs1396768	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1396773	0.92[EUR][1000 genomes]
rs1396775	0.91[ASN][1000 genomes]
rs1467049	0.95[EUR][1000 genomes]
rs1472947	0.91[ASN][1000 genomes]
rs1509452	0.92[EUR][1000 genomes]
rs1509455	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509456	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509460	0.98[ASN][1000 genomes]
rs1567374	0.92[EUR][1000 genomes]
rs1605848	0.85[EUR][1000 genomes]
rs1605851	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16872537	0.93[ASN][1000 genomes]
rs16872543	0.93[ASN][1000 genomes]
rs16872564	0.98[ASN][1000 genomes]
rs1858136	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1858137	0.92[EUR][1000 genomes]
rs1858138	0.93[ASN][1000 genomes]
rs1858139	0.88[EUR][1000 genomes]
rs1876788	0.92[EUR][1000 genomes]
rs1876790	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1912107	0.93[EUR][1000 genomes]
rs1960498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979994	0.98[ASN][1000 genomes]
rs2036745	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2175126	0.95[EUR][1000 genomes]
rs2202883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2221712	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395970	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28498583	0.98[ASN][1000 genomes]
rs28943877	0.93[ASN][1000 genomes]
rs28943879	0.86[ASN][1000 genomes]
rs2940912	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2940914	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2940916	0.95[EUR][1000 genomes]
rs2940917	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2940918	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2940919	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2940920	0.96[EUR][1000 genomes]
rs2940922	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2940923	0.96[ASN][1000 genomes]
rs2940926	0.96[EUR][1000 genomes]
rs2940927	0.93[ASN][1000 genomes]
rs2940929	0.91[EUR][1000 genomes]
rs2940931	0.98[EUR][1000 genomes]
rs2940935	0.92[EUR][1000 genomes]
rs2940939	0.89[EUR][1000 genomes]
rs2940940	0.93[ASN][1000 genomes]
rs2940942	0.92[EUR][1000 genomes]
rs2940943	0.91[EUR][1000 genomes]
rs2940945	0.93[ASN][1000 genomes]
rs2972394	0.91[ASN][1000 genomes]
rs2972395	0.92[EUR][1000 genomes]
rs2972400	0.92[EUR][1000 genomes]
rs2972404	0.98[EUR][1000 genomes]
rs2972406	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2972407	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2972408	0.96[ASN][1000 genomes]
rs2972410	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2972411	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2972412	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2972413	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2972414	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2972415	0.91[EUR][1000 genomes]
rs2972416	0.94[EUR][1000 genomes]
rs2972417	0.88[EUR][1000 genomes]
rs2972419	0.92[EUR][1000 genomes]
rs34509769	0.98[EUR][1000 genomes]
rs3764453	0.91[ASN][1000 genomes]
rs4358532	0.86[ASN][1000 genomes]
rs4642376	0.93[EUR][1000 genomes]
rs4866781	0.98[ASN][1000 genomes]
rs4866782	0.98[ASN][1000 genomes]
rs4866788	0.95[ASN][1000 genomes]
rs4866795	0.93[ASN][1000 genomes]
rs4866890	0.92[EUR][1000 genomes]
rs4866896	0.93[ASN][1000 genomes]
rs4866901	0.93[ASN][1000 genomes]
rs4866919	0.98[ASN][1000 genomes]
rs60126365	0.91[EUR][1000 genomes]
rs61636452	0.92[EUR][1000 genomes]
rs62370646	0.88[EUR][1000 genomes]
rs62370648	0.91[EUR][1000 genomes]
rs6451614	0.92[EUR][1000 genomes]
rs6451621	0.82[ASN][1000 genomes]
rs6876736	0.91[EUR][1000 genomes]
rs6881436	0.90[EUR][1000 genomes]
rs6884737	0.95[EUR][1000 genomes]
rs7379192	0.92[EUR][1000 genomes]
rs7704355	0.92[EUR][1000 genomes]
rs7728337	0.94[EUR][1000 genomes]
rs906817	0.93[ASN][1000 genomes]
rs9686286	0.91[EUR][1000 genomes]
rs9686537	0.91[ASN][1000 genomes]
rs9687863	0.87[ASN][1000 genomes]
rs974051	0.94[EUR][1000 genomes]
rs979233	0.91[ASN][1000 genomes]
rs991592	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv948514	chr5:42270161-42519262	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42443600-42453400	Weak transcription	Liver	Liver
2	chr5:42446400-42453600	Weak transcription	Right Ventricle	heart
3	chr5:42450000-42466800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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