Variant report

Variant	rs13166255
Chromosome Location	chr5:42476314-42476315
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10941577	0.92[ASN][1000 genomes]
rs1117110	0.81[ASN][1000 genomes]
rs11738365	0.81[ASN][1000 genomes]
rs11739243	0.92[ASN][1000 genomes]
rs11741390	0.92[ASN][1000 genomes]
rs11748084	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12514403	0.94[ASN][1000 genomes]
rs12515480	0.81[ASN][1000 genomes]
rs12517368	0.81[ASN][1000 genomes]
rs12518274	0.81[ASN][1000 genomes]
rs13153388	0.92[ASN][1000 genomes]
rs13166285	0.92[ASN][1000 genomes]
rs13169289	0.92[ASN][1000 genomes]
rs13178282	0.91[ASN][1000 genomes]
rs13178652	0.92[ASN][1000 genomes]
rs13189275	0.92[ASN][1000 genomes]
rs1396768	0.81[ASN][1000 genomes]
rs1509455	0.81[ASN][1000 genomes]
rs1509456	0.81[ASN][1000 genomes]
rs1509462	0.94[ASN][1000 genomes]
rs1509463	0.94[ASN][1000 genomes]
rs1858136	0.81[ASN][1000 genomes]
rs1960498	0.81[ASN][1000 genomes]
rs2036745	0.83[ASN][1000 genomes]
rs2089645	0.81[ASN][1000 genomes]
rs2202883	0.81[ASN][1000 genomes]
rs2221712	0.81[ASN][1000 genomes]
rs2395970	0.81[ASN][1000 genomes]
rs28943875	0.94[ASN][1000 genomes]
rs2940913	0.92[ASN][1000 genomes]
rs2940914	0.81[ASN][1000 genomes]
rs2940917	0.83[ASN][1000 genomes]
rs2940919	0.83[ASN][1000 genomes]
rs2940922	0.83[ASN][1000 genomes]
rs2940923	0.81[ASN][1000 genomes]
rs2940934	0.81[ASN][1000 genomes]
rs2940937	0.94[ASN][1000 genomes]
rs2940944	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2972392	0.92[ASN][1000 genomes]
rs2972393	0.92[ASN][1000 genomes]
rs2972406	0.81[ASN][1000 genomes]
rs2972407	0.81[ASN][1000 genomes]
rs2972408	0.81[ASN][1000 genomes]
rs2972410	0.83[ASN][1000 genomes]
rs2972411	0.83[ASN][1000 genomes]
rs2972412	0.83[ASN][1000 genomes]
rs2972413	0.83[ASN][1000 genomes]
rs2972418	0.94[ASN][1000 genomes]
rs2972420	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs33956936	0.92[ASN][1000 genomes]
rs35500216	0.91[ASN][1000 genomes]
rs4130114	0.92[ASN][1000 genomes]
rs4509029	0.92[ASN][1000 genomes]
rs4530764	0.92[ASN][1000 genomes]
rs4866790	0.94[ASN][1000 genomes]
rs4866931	0.92[ASN][1000 genomes]
rs4866932	0.94[ASN][1000 genomes]
rs4866933	0.94[ASN][1000 genomes]
rs4866934	0.92[ASN][1000 genomes]
rs4866935	0.94[ASN][1000 genomes]
rs58179197	0.94[ASN][1000 genomes]
rs6451621	0.95[ASN][1000 genomes]
rs6451622	0.87[ASN][1000 genomes]
rs6451624	0.92[ASN][1000 genomes]
rs6897318	0.92[ASN][1000 genomes]
rs7705834	0.92[ASN][1000 genomes]
rs7710528	0.88[ASN][1000 genomes]
rs7721578	0.92[ASN][1000 genomes]
rs7723304	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv948514	chr5:42270161-42519262	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42455000-42477400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:42468400-42484000	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:42470000-42483000	Weak transcription	Liver	Liver
4	chr5:42473000-42483000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:42474600-42483200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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