Variant report

Variant	rs6451621
Chromosome Location	chr5:42477885-42477886
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10941577	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1117110	0.82[ASN][1000 genomes]
rs11738365	0.82[ASN][1000 genomes]
rs11739243	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11741390	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11748084	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12514403	0.92[ASN][1000 genomes]
rs12515480	0.82[ASN][1000 genomes]
rs12517368	0.82[ASN][1000 genomes]
rs12518010	0.81[ASN][1000 genomes]
rs12518274	0.82[ASN][1000 genomes]
rs12522222	0.81[ASN][1000 genomes]
rs12522421	0.81[ASN][1000 genomes]
rs13153388	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13166255	0.95[ASN][1000 genomes]
rs13166285	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13169289	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13178282	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13178652	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13189275	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1396768	0.82[ASN][1000 genomes]
rs1509455	0.82[ASN][1000 genomes]
rs1509456	0.82[ASN][1000 genomes]
rs1509460	0.84[ASN][1000 genomes]
rs1509462	0.92[ASN][1000 genomes]
rs1509463	0.92[ASN][1000 genomes]
rs16872564	0.81[ASN][1000 genomes]
rs1858136	0.82[ASN][1000 genomes]
rs1960498	0.82[ASN][1000 genomes]
rs1979994	0.81[ASN][1000 genomes]
rs2036745	0.84[ASN][1000 genomes]
rs2089645	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2202883	0.82[ASN][1000 genomes]
rs2221712	0.82[ASN][1000 genomes]
rs2395970	0.82[ASN][1000 genomes]
rs28498583	0.81[ASN][1000 genomes]
rs28943875	0.92[ASN][1000 genomes]
rs2940913	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2940914	0.82[ASN][1000 genomes]
rs2940917	0.84[ASN][1000 genomes]
rs2940919	0.84[ASN][1000 genomes]
rs2940922	0.84[ASN][1000 genomes]
rs2940923	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2940934	0.82[ASN][1000 genomes]
rs2940937	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2940944	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2972392	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2972393	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2972406	0.82[ASN][1000 genomes]
rs2972407	0.82[ASN][1000 genomes]
rs2972408	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2972410	0.84[ASN][1000 genomes]
rs2972411	0.84[ASN][1000 genomes]
rs2972412	0.84[ASN][1000 genomes]
rs2972413	0.84[ASN][1000 genomes]
rs2972418	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2972420	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs33956936	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35500216	0.92[ASN][1000 genomes]
rs4130114	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4509029	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4530764	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4866781	0.81[ASN][1000 genomes]
rs4866782	0.81[ASN][1000 genomes]
rs4866788	0.81[ASN][1000 genomes]
rs4866790	0.92[ASN][1000 genomes]
rs4866919	0.81[ASN][1000 genomes]
rs4866931	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4866932	0.92[ASN][1000 genomes]
rs4866933	0.92[ASN][1000 genomes]
rs4866934	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4866935	0.92[ASN][1000 genomes]
rs58179197	0.92[ASN][1000 genomes]
rs6451622	0.92[ASN][1000 genomes]
rs6451624	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6897318	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7705834	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7707482	0.81[AMR][1000 genomes]
rs7710528	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7721578	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7723304	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv948514	chr5:42270161-42519262	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42468400-42484000	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:42470000-42483000	Weak transcription	Liver	Liver
3	chr5:42473000-42483000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:42474600-42483200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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