Variant report

Variant	rs4866919
Chromosome Location	chr5:42436607-42436608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10064323	0.89[ASN][1000 genomes]
rs10941576	0.89[ASN][1000 genomes]
rs1117110	0.98[ASN][1000 genomes]
rs11738365	0.98[ASN][1000 genomes]
rs12513643	0.91[ASN][1000 genomes]
rs12514403	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12515480	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12517368	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12517931	0.91[ASN][1000 genomes]
rs12518010	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12518274	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12520318	0.91[ASN][1000 genomes]
rs12522222	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522421	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12523537	0.89[ASN][1000 genomes]
rs12654242	0.86[ASN][1000 genomes]
rs13185872	0.89[ASN][1000 genomes]
rs1396768	0.98[ASN][1000 genomes]
rs1396775	0.89[ASN][1000 genomes]
rs1472947	0.89[ASN][1000 genomes]
rs1509455	0.98[ASN][1000 genomes]
rs1509456	0.98[ASN][1000 genomes]
rs1509460	0.96[ASN][1000 genomes]
rs1509462	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1509463	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1605851	0.95[ASN][1000 genomes]
rs16872537	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16872543	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16872562	0.81[AFR][1000 genomes]
rs16872564	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1858136	0.98[ASN][1000 genomes]
rs1858138	0.91[ASN][1000 genomes]
rs1876790	0.93[ASN][1000 genomes]
rs1960498	0.98[ASN][1000 genomes]
rs1979994	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036745	0.96[ASN][1000 genomes]
rs2202883	0.98[ASN][1000 genomes]
rs2221712	0.98[ASN][1000 genomes]
rs2395970	0.98[ASN][1000 genomes]
rs28498583	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28943875	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28943877	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28943879	0.87[ASN][1000 genomes]
rs2940912	0.89[ASN][1000 genomes]
rs2940914	0.98[ASN][1000 genomes]
rs2940917	0.96[ASN][1000 genomes]
rs2940918	0.90[ASN][1000 genomes]
rs2940919	0.96[ASN][1000 genomes]
rs2940922	0.96[ASN][1000 genomes]
rs2940923	0.95[ASN][1000 genomes]
rs2940927	0.91[ASN][1000 genomes]
rs2940934	0.98[ASN][1000 genomes]
rs2940940	0.91[ASN][1000 genomes]
rs2940945	0.91[ASN][1000 genomes]
rs2972394	0.89[ASN][1000 genomes]
rs2972406	0.98[ASN][1000 genomes]
rs2972407	0.98[ASN][1000 genomes]
rs2972408	0.95[ASN][1000 genomes]
rs2972410	0.96[ASN][1000 genomes]
rs2972411	0.96[ASN][1000 genomes]
rs2972412	0.96[ASN][1000 genomes]
rs2972413	0.96[ASN][1000 genomes]
rs2972414	0.84[ASN][1000 genomes]
rs34069689	1.00[EUR][1000 genomes]
rs3764453	0.93[ASN][1000 genomes]
rs4358532	0.84[ASN][1000 genomes]
rs4866781	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4866782	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4866785	1.00[EUR][1000 genomes]
rs4866788	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4866790	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4866795	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4866896	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4866901	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4866932	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4866933	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4866935	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58179197	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6451621	0.81[ASN][1000 genomes]
rs906817	0.91[ASN][1000 genomes]
rs949559	0.91[AMR][1000 genomes]
rs9686537	0.89[ASN][1000 genomes]
rs9687863	0.86[ASN][1000 genomes]
rs979233	0.89[ASN][1000 genomes]
rs991592	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv881375	chr5:42254097-42442715	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv948514	chr5:42270161-42519262	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42430600-42438800	Weak transcription	Aorta	Aorta
2	chr5:42433000-42437000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr5:42433600-42437000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:42434000-42437000	Enhancers	Liver	Liver
5	chr5:42435400-42446600	Weak transcription	Adipose Nuclei	Adipose
6	chr5:42435600-42438400	Weak transcription	Fetal Intestine Large	intestine
7	chr5:42436000-42436800	Enhancers	Psoas Muscle	Psoas
8	chr5:42436000-42437400	Enhancers	Fetal Lung	lung
9	chr5:42436200-42437400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:42436400-42447400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:42436600-42442200	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links