Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12514403	1.00[EUR][1000 genomes]
rs12515480	1.00[EUR][1000 genomes]
rs12517368	1.00[EUR][1000 genomes]
rs12518010	1.00[EUR][1000 genomes]
rs12518274	1.00[EUR][1000 genomes]
rs12522222	1.00[EUR][1000 genomes]
rs12522421	1.00[EUR][1000 genomes]
rs1509462	1.00[EUR][1000 genomes]
rs1509463	1.00[EUR][1000 genomes]
rs16872564	1.00[EUR][1000 genomes]
rs1979994	1.00[EUR][1000 genomes]
rs28498583	1.00[EUR][1000 genomes]
rs28943875	1.00[EUR][1000 genomes]
rs4866781	1.00[EUR][1000 genomes]
rs4866782	1.00[EUR][1000 genomes]
rs4866785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4866788	1.00[EUR][1000 genomes]
rs4866790	1.00[EUR][1000 genomes]
rs4866919	1.00[EUR][1000 genomes]
rs4866932	1.00[EUR][1000 genomes]
rs4866933	1.00[EUR][1000 genomes]
rs4866935	1.00[EUR][1000 genomes]
rs58179197	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv948514	chr5:42270161-42519262	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42450000-42466800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:42454800-42460000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:42454800-42471800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:42455000-42456800	Weak transcription	Left Ventricle	heart
5	chr5:42455000-42460000	Weak transcription	Psoas Muscle	Psoas
6	chr5:42455000-42461200	Weak transcription	Right Atrium	heart
7	chr5:42455000-42469600	Weak transcription	Lung	lung
8	chr5:42455000-42474400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr5:42455000-42477400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:42455200-42459000	Weak transcription	Adipose Nuclei	Adipose
11	chr5:42455200-42461600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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