Variant report

Variant	rs6451622
Chromosome Location	chr5:42478108-42478109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10941577	0.86[ASN][1000 genomes]
rs11739243	0.86[ASN][1000 genomes]
rs11741390	0.86[ASN][1000 genomes]
rs11748084	0.85[ASN][1000 genomes]
rs12514403	0.87[ASN][1000 genomes]
rs13153388	0.86[ASN][1000 genomes]
rs13166255	0.87[ASN][1000 genomes]
rs13166285	0.86[ASN][1000 genomes]
rs13169289	0.86[ASN][1000 genomes]
rs13178282	0.85[ASN][1000 genomes]
rs13178652	0.86[ASN][1000 genomes]
rs13189275	0.86[ASN][1000 genomes]
rs1509462	0.87[ASN][1000 genomes]
rs1509463	0.87[ASN][1000 genomes]
rs28943875	0.87[ASN][1000 genomes]
rs2940913	0.86[ASN][1000 genomes]
rs2940937	0.87[ASN][1000 genomes]
rs2940944	0.86[ASN][1000 genomes]
rs2972392	0.86[ASN][1000 genomes]
rs2972393	0.86[ASN][1000 genomes]
rs2972418	0.87[ASN][1000 genomes]
rs2972420	0.86[ASN][1000 genomes]
rs33956936	0.86[ASN][1000 genomes]
rs35500216	0.87[ASN][1000 genomes]
rs4130114	0.86[ASN][1000 genomes]
rs4509029	0.86[ASN][1000 genomes]
rs4530764	0.86[ASN][1000 genomes]
rs4866790	0.87[ASN][1000 genomes]
rs4866931	0.86[ASN][1000 genomes]
rs4866932	0.87[ASN][1000 genomes]
rs4866933	0.87[ASN][1000 genomes]
rs4866934	0.86[ASN][1000 genomes]
rs4866935	0.87[ASN][1000 genomes]
rs58179197	0.87[ASN][1000 genomes]
rs6451621	0.92[ASN][1000 genomes]
rs6451624	0.86[ASN][1000 genomes]
rs6897318	0.86[ASN][1000 genomes]
rs7705834	0.86[ASN][1000 genomes]
rs7710528	0.82[ASN][1000 genomes]
rs7721578	0.86[ASN][1000 genomes]
rs7723304	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv948514	chr5:42270161-42519262	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42468400-42484000	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:42470000-42483000	Weak transcription	Liver	Liver
3	chr5:42473000-42483000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:42474600-42483200	Weak transcription	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links