Variant report

Variant	rs12657293
Chromosome Location	chr5:114642520-114642521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11740923	0.86[ASN][1000 genomes]
rs169127	0.81[AMR][1000 genomes]
rs2085278	0.96[ASN][1000 genomes]
rs2100521	0.96[ASN][1000 genomes]
rs2112362	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs267291	0.88[CEU][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3095906	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72815918	0.94[ASN][1000 genomes]
rs7734924	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980960	chr5:114640484-114645980	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114641800-114642600	Enhancers	Duodenum Mucosa	Duodenum
2	chr5:114642200-114651200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:114642200-114651400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:114642400-114647400	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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