Variant report

Variant	rs7734924
Chromosome Location	chr5:114642041-114642042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11740923	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12657293	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2085278	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2100521	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2112362	0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2161196	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs72813854	0.81[AFR][1000 genomes]
rs72815918	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980960	chr5:114640484-114645980	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114641600-114642200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:114641600-114642200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:114641600-114642200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:114641600-114642400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr5:114641800-114642200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:114641800-114642200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:114641800-114642200	Enhancers	Fetal Intestine Small	intestine
8	chr5:114641800-114642200	Enhancers	Stomach Mucosa	stomach
9	chr5:114641800-114642400	Enhancers	Brain Germinal Matrix	brain
10	chr5:114641800-114642600	Enhancers	Duodenum Mucosa	Duodenum
11	chr5:114642000-114642400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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