Variant report

Variant	rs12659246
Chromosome Location	chr5:113110522-113110523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10045721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10050494	0.81[ASN][1000 genomes]
rs10051024	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10079841	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10463649	1.00[ASN][1000 genomes]
rs10478145	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519361	0.85[ASN][1000 genomes]
rs12656723	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12657702	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12657707	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13358333	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1905137	1.00[ASN][1000 genomes]
rs4489053	0.87[ASN][1000 genomes]
rs4568351	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4705570	0.87[ASN][1000 genomes]
rs57146021	0.96[ASN][1000 genomes]
rs57816032	1.00[ASN][1000 genomes]
rs58624507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58950235	1.00[ASN][1000 genomes]
rs59359554	0.84[ASN][1000 genomes]
rs60765088	1.00[ASN][1000 genomes]
rs61346638	0.96[ASN][1000 genomes]
rs61355921	1.00[ASN][1000 genomes]
rs61433531	1.00[ASN][1000 genomes]
rs62372775	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62372777	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6874379	0.84[ASN][1000 genomes]
rs6878998	0.96[ASN][1000 genomes]
rs7705873	0.87[ASN][1000 genomes]
rs7732090	1.00[ASN][1000 genomes]
rs9326903	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462390	chr5:113076095-113181289	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv471041	chr5:113076095-113181289	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599408	chr5:113076095-113181289	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv432799	chr5:113077017-113150101	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv599409	chr5:113079354-113184211	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1018938	chr5:113080567-113185361	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1027940	chr5:113091513-113185361	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113099800-113111800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:113106800-113111400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:113106800-113111400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:113107000-113111600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:113110000-113111400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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