Variant report

Variant	rs62372777
Chromosome Location	chr5:113027143-113027144
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:45195240..45197624-chr5:113025407..113028387,4	K562	blood:
2	chr1:45196024..45196999-chr5:113026387..113027407,8	HCT-116	colon:

Variant related genes	Relation type
ENSG00000200169	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10045721	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10050494	0.91[ASN][1000 genomes]
rs10051024	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10079841	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10463649	0.84[ASN][1000 genomes]
rs10478145	0.84[ASN][1000 genomes]
rs10519361	0.97[ASN][1000 genomes]
rs12656723	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12657702	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12657707	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12659246	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13358333	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1905137	0.84[ASN][1000 genomes]
rs2416328	0.83[ASN][1000 genomes]
rs4489053	0.97[ASN][1000 genomes]
rs4492103	0.83[ASN][1000 genomes]
rs4568351	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705570	0.97[ASN][1000 genomes]
rs57146021	0.87[ASN][1000 genomes]
rs57816032	0.84[ASN][1000 genomes]
rs58624507	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58950235	0.84[ASN][1000 genomes]
rs59359554	0.96[ASN][1000 genomes]
rs60765088	0.84[ASN][1000 genomes]
rs61346638	0.87[ASN][1000 genomes]
rs61355921	0.84[ASN][1000 genomes]
rs61433531	0.84[ASN][1000 genomes]
rs62372775	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6874379	0.96[ASN][1000 genomes]
rs6878998	0.87[ASN][1000 genomes]
rs7705873	0.97[ASN][1000 genomes]
rs7732090	0.84[ASN][1000 genomes]
rs9326903	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599407	chr5:112981528-113029914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113018800-113027200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr5:113019000-113028000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:113025400-113028200	Weak transcription	Fetal Kidney	kidney
4	chr5:113026000-113028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:113026600-113028800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:113027000-113028400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:113027000-113028600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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