Variant report

Variant	rs12661354
Chromosome Location	chr6:114422641-114422642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12663936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17075861	1.00[GIH][hapmap]
rs17191460	0.93[ASN][1000 genomes]
rs17794523	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1889555	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs2275094	0.93[ASN][1000 genomes]
rs56403749	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72952520	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72952530	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114415000-114429600	Weak transcription	HepG2	liver
2	chr6:114417400-114426200	Weak transcription	Brain Anterior Caudate	brain
3	chr6:114417800-114428400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:114421200-114423600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:114421400-114422800	Enhancers	Osteobl	bone
6	chr6:114421800-114423400	Weak transcription	HSMMtube	muscle
7	chr6:114421800-114423600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:114421800-114425800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:114422200-114438800	Weak transcription	HSMM	muscle
10	chr6:114422400-114422800	Enhancers	Brain Substantia Nigra	brain
11	chr6:114422600-114430000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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