Variant report

Variant	rs17191460
Chromosome Location	chr6:114441585-114441586
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12661354	0.93[ASN][1000 genomes]
rs12663936	0.93[ASN][1000 genomes]
rs17794523	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889555	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275094	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56403749	0.87[ASN][1000 genomes]
rs72952520	0.93[ASN][1000 genomes]
rs72952530	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114425600-114443000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:114426000-114443200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:114430200-114443400	Weak transcription	HepG2	liver
4	chr6:114430800-114477800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:114438000-114442200	Weak transcription	HSMMtube	muscle
6	chr6:114438000-114443000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:114438000-114445200	Weak transcription	Psoas Muscle	Psoas
8	chr6:114439400-114446800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:114439600-114443000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:114440000-114443000	Weak transcription	HSMM	muscle
11	chr6:114440600-114442400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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