Variant report

Variant	rs12661650
Chromosome Location	chr6:73327159-73327160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73325918..73327224-chr6:73839102..73840270,6	MCF-7	breast:
2	chr6:73326966..73327836-chr6:73839389..73839934,2	MCF-7	breast:
3	chr6:73326755..73329181-chr6:73329336..73331379,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10805964	0.81[ASN][1000 genomes]
rs10943042	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10943044	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12175038	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12528674	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13213217	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1543621	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17692121	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3734212	0.83[ASN][1000 genomes]
rs6899573	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6900054	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6900100	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6913237	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6931363	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6937158	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6937341	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7772714	0.81[ASN][1000 genomes]
rs867521	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9342961	0.81[ASN][1000 genomes]
rs9360570	0.81[ASN][1000 genomes]
rs9360571	0.81[ASN][1000 genomes]
rs9360572	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9360580	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73323800-73328800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:73324000-73327400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:73324600-73329400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:73326200-73329400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:73326400-73329000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:73326400-73329200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:73326600-73327400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:73326600-73328800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:73326600-73329000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:73326600-73329000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:73326600-73329200	Weak transcription	Primary B cells from cord blood	blood
12	chr6:73326800-73328800	Weak transcription	Fetal Heart	heart
13	chr6:73327000-73327400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:73327000-73328400	Weak transcription	Primary T cells from cord blood	blood

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