Variant report

Variant	rs3734212
Chromosome Location	chr6:73332040-73332041
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73331830..73337292-chr6:73338860..73341706,8	K562	blood:

Variant related genes	Relation type
ENSG00000233844	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10805964	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10943042	0.96[ASN][1000 genomes]
rs10943044	0.96[ASN][1000 genomes]
rs10943046	0.95[ASN][1000 genomes]
rs12111265	0.91[ASN][1000 genomes]
rs12175038	0.96[ASN][1000 genomes]
rs12523691	0.89[ASN][1000 genomes]
rs12528674	0.96[ASN][1000 genomes]
rs12661650	0.83[ASN][1000 genomes]
rs13213217	0.95[ASN][1000 genomes]
rs1543621	0.95[ASN][1000 genomes]
rs17692121	0.96[ASN][1000 genomes]
rs1884090	0.89[ASN][1000 genomes]
rs3936157	0.89[ASN][1000 genomes]
rs4707978	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4707980	0.83[ASN][1000 genomes]
rs4707981	0.90[ASN][1000 genomes]
rs4707983	0.86[ASN][1000 genomes]
rs4707984	0.85[ASN][1000 genomes]
rs67895524	0.84[ASN][1000 genomes]
rs68141942	0.83[ASN][1000 genomes]
rs6899573	0.95[ASN][1000 genomes]
rs6900054	0.95[ASN][1000 genomes]
rs6900100	0.94[ASN][1000 genomes]
rs6913237	0.94[ASN][1000 genomes]
rs6915647	0.86[ASN][1000 genomes]
rs6917707	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6922044	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6926943	0.84[ASN][1000 genomes]
rs6931363	0.95[ASN][1000 genomes]
rs6937158	0.96[ASN][1000 genomes]
rs6937341	0.96[ASN][1000 genomes]
rs7451091	0.89[ASN][1000 genomes]
rs769133	0.89[ASN][1000 genomes]
rs7742742	0.86[ASN][1000 genomes]
rs7749079	0.83[ASN][1000 genomes]
rs7749264	0.82[ASN][1000 genomes]
rs7760979	0.82[ASN][1000 genomes]
rs7768117	0.82[ASN][1000 genomes]
rs7771839	0.89[ASN][1000 genomes]
rs7772714	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs867521	0.97[ASN][1000 genomes]
rs883632	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9293896	0.82[ASN][1000 genomes]
rs9293897	0.81[ASN][1000 genomes]
rs9342961	0.94[ASN][1000 genomes]
rs9342962	0.87[ASN][1000 genomes]
rs9360570	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9360571	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9360572	0.96[ASN][1000 genomes]
rs9360573	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9360580	0.95[ASN][1000 genomes]
rs9360584	0.82[ASN][1000 genomes]
rs9360588	0.86[ASN][1000 genomes]
rs9442830	0.87[ASN][1000 genomes]
rs9442831	0.87[ASN][1000 genomes]
rs9442832	0.83[ASN][1000 genomes]
rs9442836	0.82[ASN][1000 genomes]
rs9446734	0.89[ASN][1000 genomes]
rs9446739	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3412497	chr6:73330856-73333404	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73329200-73333800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:73329400-73333200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
3	chr6:73329400-73334400	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr6:73329600-73332400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:73329600-73332600	Active TSS	Brain Anterior Caudate	brain
6	chr6:73329600-73332600	Active TSS	Brain Cingulate Gyrus	brain
7	chr6:73329600-73332800	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr6:73329600-73333200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:73329600-73333200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr6:73329600-73333200	Active TSS	Aorta	Aorta
11	chr6:73329600-73333600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr6:73329600-73333600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:73329600-73333800	Active TSS	Brain Angular Gyrus	brain
14	chr6:73329800-73332800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:73329800-73333200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
16	chr6:73329800-73333200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
17	chr6:73329800-73333200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr6:73329800-73333200	Active TSS	Psoas Muscle	Psoas
19	chr6:73329800-73333400	Active TSS	Primary T killer memory cells from peripheral blood	blood
20	chr6:73329800-73333400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:73330000-73332400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:73330000-73332400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
23	chr6:73330000-73333200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
24	chr6:73330200-73333200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:73330400-73333000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:73330600-73332800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
27	chr6:73330600-73333200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:73330800-73332200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
29	chr6:73330800-73332200	Active TSS	NHLF	lung
30	chr6:73330800-73333200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:73330800-73333200	Flanking Active TSS	Pancreas	Pancrea
32	chr6:73330800-73333400	Bivalent/Poised TSS	NHDF-Ad	bronchial
33	chr6:73330800-73333400	Active TSS	Osteobl	bone
34	chr6:73331000-73332200	Active TSS	Ovary	ovary
35	chr6:73331000-73332400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
36	chr6:73331000-73333000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr6:73331000-73333000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:73331000-73333000	Bivalent Enhancer	Fetal Brain Male	brain
39	chr6:73331000-73333200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:73331000-73333200	Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr6:73331000-73333200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
42	chr6:73331000-73333600	Bivalent/Poised TSS	A549	lung
43	chr6:73331000-73334000	Active TSS	HSMMtube	muscle
44	chr6:73331200-73332400	Active TSS	Brain Substantia Nigra	brain
45	chr6:73331200-73332800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr6:73331200-73332800	Bivalent/Poised TSS	Small Intestine	intestine
47	chr6:73331200-73333000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
48	chr6:73331200-73333400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:73331200-73333400	Active TSS	Primary B cells from peripheral blood	blood
50	chr6:73331400-73332200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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