Variant report

Variant	rs7749079
Chromosome Location	chr6:73383630-73383631
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10805964	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10943042	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10943044	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10943046	0.88[ASN][1000 genomes]
rs12111265	0.91[CHB][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12175038	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs12523691	0.86[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs12528674	0.85[ASN][1000 genomes]
rs13213217	0.85[ASN][1000 genomes]
rs1543621	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs16882711	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17692121	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1884090	0.86[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs2207265	0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs3734212	0.83[ASN][1000 genomes]
rs3936157	0.89[ASN][1000 genomes]
rs4706511	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs4707978	0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4707980	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4707981	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs4707983	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs4707984	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs4707985	0.81[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs6453598	0.82[JPT][hapmap]
rs6453599	0.82[JPT][hapmap]
rs6453600	0.82[JPT][hapmap]
rs67188382	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs67895524	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68141942	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6899573	0.85[ASN][1000 genomes]
rs6900054	0.85[ASN][1000 genomes]
rs6900100	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs6900103	0.82[ASN][1000 genomes]
rs6906977	0.82[JPT][hapmap]
rs6910780	0.82[JPT][hapmap]
rs6913237	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs6915647	0.89[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs6917707	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.95[ASN][1000 genomes]
rs6922044	0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.81[YRI][hapmap];0.95[ASN][1000 genomes]
rs6922479	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs6922837	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs6923028	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs6926943	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6931363	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs6937158	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs6937341	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs7451091	0.86[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs769133	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs7742547	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7742742	0.85[ASN][1000 genomes]
rs7749264	0.97[ASN][1000 genomes]
rs7760979	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7768117	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7771839	0.89[ASN][1000 genomes]
rs7772714	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs7776102	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs867521	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs883631	0.81[ASN][1000 genomes]
rs883632	0.93[ASN][1000 genomes]
rs9293894	0.81[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9293896	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs9293897	0.80[ASN][1000 genomes]
rs9293898	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9293899	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9293902	0.81[JPT][hapmap]
rs9293904	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs9341386	0.81[JPT][hapmap]
rs9342961	0.81[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs9342962	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9351938	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs9360570	0.86[ASN][1000 genomes]
rs9360571	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs9360572	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs9360573	0.95[ASN][1000 genomes]
rs9360580	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs9360584	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9360587	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9360588	0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs9442830	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9442831	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9442832	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9442834	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9442835	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9442836	0.85[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs9446734	0.90[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs9446735	0.94[ASN][1000 genomes]
rs9446739	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs9446740	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs993314	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1794408	chr6:73363298-73419987	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv463152	chr6:73369739-73406890	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv603692	chr6:73369739-73406890	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73359600-73398800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:73359800-73386800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73372000-73386800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:73377200-73399000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:73379400-73412600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:73381200-73403600	Weak transcription	Primary T cells from cord blood	blood
7	chr6:73381400-73384600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:73382400-73389800	Weak transcription	GM12878-XiMat	blood
9	chr6:73382800-73385000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:73382800-73414200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:73383400-73384200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:73383600-73412200	Weak transcription	Primary B cells from cord blood	blood

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