Variant report

Variant	rs9442836
Chromosome Location	chr6:73413135-73413136
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10080760	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10805964	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10943042	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10943044	0.85[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10943046	0.85[ASN][1000 genomes]
rs12111265	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12175038	0.85[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12523691	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12528674	0.86[ASN][1000 genomes]
rs13213217	0.86[ASN][1000 genomes]
rs1543621	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16882711	0.90[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs17692121	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17740488	1.00[YRI][hapmap]
rs1884090	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1997914	0.80[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2207265	0.84[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2207266	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs2207267	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs2223939	0.83[ASN][1000 genomes]
rs3734212	0.82[ASN][1000 genomes]
rs3936157	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4706509	0.83[YRI][hapmap]
rs4706511	0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4707978	0.81[JPT][hapmap]
rs4707980	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs4707981	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4707983	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4707984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4707985	0.86[JPT][hapmap]
rs6453598	0.80[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs6453599	0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6453600	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs66811027	0.86[ASN][1000 genomes]
rs67895524	0.82[ASN][1000 genomes]
rs68141942	0.81[ASN][1000 genomes]
rs6899573	0.86[ASN][1000 genomes]
rs6900054	0.86[ASN][1000 genomes]
rs6900100	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6906977	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6910780	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs6913237	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6915647	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6917707	0.81[JPT][hapmap]
rs6922044	0.85[JPT][hapmap]
rs6922327	0.90[ASN][1000 genomes]
rs6922479	0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs6922837	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6923028	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6926943	0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs6931363	0.85[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6937158	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6937341	0.84[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7451091	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs769133	0.95[CHB][hapmap];0.85[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7738588	0.81[ASN][1000 genomes]
rs7738589	0.83[ASN][1000 genomes]
rs7742742	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7749079	0.85[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs7749264	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7754096	0.87[ASN][1000 genomes]
rs7760979	0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs7768117	0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7771839	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7772481	0.86[ASN][1000 genomes]
rs7772714	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7772876	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7776102	0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs867521	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9293896	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293897	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9293898	0.95[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs9293899	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs9293900	0.83[ASN][1000 genomes]
rs9293901	0.83[ASN][1000 genomes]
rs9293902	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs9293904	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs9293905	0.88[ASN][1000 genomes]
rs9293906	0.87[ASN][1000 genomes]
rs9341386	0.84[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9342961	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9342962	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs9342967	0.83[ASN][1000 genomes]
rs9342968	0.89[ASN][1000 genomes]
rs9351938	0.85[JPT][hapmap]
rs9360570	0.84[ASN][1000 genomes]
rs9360571	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9360572	0.85[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9360580	0.85[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9360584	0.95[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs9360587	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9360588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9360593	0.86[ASN][1000 genomes]
rs9360594	0.89[ASN][1000 genomes]
rs9442830	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs9442831	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs9442832	0.81[ASN][1000 genomes]
rs9442834	0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs9442835	0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs9442837	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs9446734	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9446735	0.87[ASN][1000 genomes]
rs9446739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9446740	0.84[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs993314	0.85[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1794408	chr6:73363298-73419987	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73382800-73414200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73392400-73429800	Weak transcription	HSMM	muscle
3	chr6:73399400-73419200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:73399400-73429200	Weak transcription	Aorta	Aorta
5	chr6:73399400-73438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:73412000-73413200	Enhancers	K562	blood
7	chr6:73412200-73413200	Enhancers	Fetal Heart	heart
8	chr6:73412200-73413600	Strong transcription	Primary B cells from cord blood	blood
9	chr6:73412400-73413200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:73412800-73413200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:73413000-73413200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:73413000-73413600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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