Variant report

Variant	rs9293898
Chromosome Location	chr6:73426130-73426131
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10805964	0.86[JPT][hapmap]
rs10943042	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10943044	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs12111265	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs12175038	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs12523691	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs1543621	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs16882711	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16882726	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs17692121	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs1884090	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs2207265	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs2207266	0.81[JPT][hapmap]
rs2207267	0.81[JPT][hapmap]
rs4706511	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs4707978	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4707980	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4707981	0.95[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs4707983	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs4707984	0.95[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs4707985	0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs55982853	0.83[AFR][1000 genomes]
rs6453598	0.83[JPT][hapmap]
rs6453599	0.82[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs6453600	0.83[JPT][hapmap]
rs67895524	0.86[ASN][1000 genomes]
rs68141942	0.85[ASN][1000 genomes]
rs6900100	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs6904964	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs6906977	0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs6910780	0.83[JPT][hapmap]
rs6913237	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs6915647	0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs6917707	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6922044	0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6922327	0.80[ASN][1000 genomes]
rs6922479	0.86[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs6922837	0.86[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs6923028	0.86[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs6924191	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs6926943	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6931363	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs6937158	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs6937341	0.80[CHB][hapmap];0.87[JPT][hapmap]
rs7451091	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs769133	0.91[CHB][hapmap]
rs7749079	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7749264	0.88[ASN][1000 genomes]
rs7754096	0.81[ASN][1000 genomes]
rs7760979	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7768117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7772714	0.87[JPT][hapmap]
rs7776102	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs867521	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs883632	0.80[ASN][1000 genomes]
rs9293894	0.82[JPT][hapmap]
rs9293896	0.86[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs9293897	0.85[ASN][1000 genomes]
rs9293899	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9293902	0.82[JPT][hapmap]
rs9293904	0.86[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs9341386	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs9342961	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs9342962	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9351938	0.81[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs9360571	0.87[JPT][hapmap]
rs9360572	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs9360573	0.82[ASN][1000 genomes]
rs9360580	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs9360584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9360587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9360588	0.95[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs9442830	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9442831	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9442832	0.85[ASN][1000 genomes]
rs9442834	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9442835	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9442836	0.95[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs9446734	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs9446735	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9446739	0.95[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs9446740	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs993314	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73392400-73429800	Weak transcription	HSMM	muscle
2	chr6:73399400-73429200	Weak transcription	Aorta	Aorta
3	chr6:73399400-73438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73421800-73431400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:73422800-73428000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:73423000-73434000	Weak transcription	Primary B cells from cord blood	blood
7	chr6:73425200-73429400	Weak transcription	Psoas Muscle	Psoas
8	chr6:73425200-73429800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:73425200-73437600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:73425400-73429600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:73425400-73430400	Weak transcription	HMEC	breast
12	chr6:73426000-73426800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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