Variant report

Variant	rs6906977
Chromosome Location	chr6:73430216-73430217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10080760	0.92[EUR][1000 genomes]
rs10805964	0.95[JPT][hapmap]
rs10943042	0.95[JPT][hapmap]
rs10943044	0.95[JPT][hapmap]
rs12111265	0.85[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12175038	0.95[JPT][hapmap]
rs12523691	0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1543621	0.95[JPT][hapmap]
rs16882711	0.81[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs17692121	0.95[JPT][hapmap]
rs17740488	0.91[YRI][hapmap]
rs1884090	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1997914	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs2207265	0.95[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2207266	0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2207267	0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2223939	0.90[ASN][1000 genomes]
rs3936157	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4706511	0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs4707978	0.83[JPT][hapmap]
rs4707981	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4707983	0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4707984	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4707985	0.86[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs6453598	0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs6453599	0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6453600	0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs66811027	0.82[ASN][1000 genomes]
rs6900100	0.95[JPT][hapmap]
rs6910780	0.90[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs6913237	0.95[JPT][hapmap]
rs6915647	0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6917707	0.83[JPT][hapmap]
rs6922044	0.83[JPT][hapmap]
rs6922327	0.86[ASN][1000 genomes]
rs6922479	0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs6922837	0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs6923028	0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs6926943	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs6931363	0.95[JPT][hapmap]
rs6937158	0.95[JPT][hapmap]
rs6937341	0.95[JPT][hapmap]
rs7451091	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs769133	0.85[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7738588	0.89[ASN][1000 genomes]
rs7738589	0.90[ASN][1000 genomes]
rs7742742	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7749079	0.82[JPT][hapmap]
rs7749264	0.89[EUR][1000 genomes]
rs7754096	0.82[ASN][1000 genomes]
rs7760979	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs7768117	0.86[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes]
rs7771839	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7772481	0.93[ASN][1000 genomes]
rs7772714	0.95[JPT][hapmap]
rs7772876	0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7776102	0.86[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs867521	0.95[JPT][hapmap]
rs9293896	0.82[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9293897	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9293898	0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs9293899	0.81[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs9293900	0.90[ASN][1000 genomes]
rs9293901	0.90[ASN][1000 genomes]
rs9293902	0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs9293904	0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs9293905	0.83[ASN][1000 genomes]
rs9293906	0.83[ASN][1000 genomes]
rs9341386	0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs9342961	0.85[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9342962	0.83[JPT][hapmap]
rs9342967	0.90[ASN][1000 genomes]
rs9342968	0.85[ASN][1000 genomes]
rs9351938	0.85[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs9360571	0.95[JPT][hapmap]
rs9360572	0.95[JPT][hapmap]
rs9360580	0.95[JPT][hapmap]
rs9360584	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs9360587	0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9360588	0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9360593	0.94[ASN][1000 genomes]
rs9360594	0.85[ASN][1000 genomes]
rs9442830	0.83[JPT][hapmap]
rs9442831	0.83[JPT][hapmap]
rs9442834	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs9442835	0.81[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs9442836	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9442837	0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs9446734	0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9446739	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9446740	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs993314	0.90[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73399400-73438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73421800-73431400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73423000-73434000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:73425200-73437600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:73425400-73430400	Weak transcription	HMEC	breast
6	chr6:73429000-73430400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:73429400-73430800	Enhancers	Osteobl	bone
8	chr6:73429600-73434400	Weak transcription	Psoas Muscle	Psoas
9	chr6:73429800-73430600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:73429800-73430600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:73429800-73430600	Enhancers	HSMM	muscle
12	chr6:73429800-73430600	Enhancers	NH-A	brain
13	chr6:73430000-73430400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:73430000-73431200	Weak transcription	Placenta Amnion	Placenta Amnion

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