Variant report

Variant	rs9293905
Chromosome Location	chr6:73446809-73446810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73442403..73444704-chr6:73445058..73447034,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12111265	0.83[ASN][1000 genomes]
rs12523691	0.81[ASN][1000 genomes]
rs16882711	0.81[ASN][1000 genomes]
rs1884090	0.81[ASN][1000 genomes]
rs1997914	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2207266	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2207267	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2223939	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3936157	0.81[ASN][1000 genomes]
rs4706511	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4707983	0.83[ASN][1000 genomes]
rs4707984	0.85[ASN][1000 genomes]
rs6453598	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6453599	0.84[ASN][1000 genomes]
rs6453600	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs66811027	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6906977	0.83[ASN][1000 genomes]
rs6910780	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6915647	0.83[ASN][1000 genomes]
rs6922327	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6922479	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6922837	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6923028	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7451091	0.81[ASN][1000 genomes]
rs769133	0.81[ASN][1000 genomes]
rs7738588	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7738589	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7754096	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7771839	0.81[ASN][1000 genomes]
rs7772481	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7772876	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9293896	0.88[ASN][1000 genomes]
rs9293897	0.86[ASN][1000 genomes]
rs9293899	0.83[ASN][1000 genomes]
rs9293900	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9293901	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9293902	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9293904	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9293906	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9341386	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9342967	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9342968	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9351938	0.81[ASN][1000 genomes]
rs9360588	0.83[ASN][1000 genomes]
rs9360593	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9360594	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9442836	0.88[ASN][1000 genomes]
rs9442837	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9446734	0.81[ASN][1000 genomes]
rs9446739	0.89[ASN][1000 genomes]
rs9446740	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs993314	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886154	chr6:73442239-73471683	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73437800-73455200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:73438400-73455400	Weak transcription	HMEC	breast
3	chr6:73438600-73447800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:73443200-73455400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:73443800-73448400	Weak transcription	Primary B cells from cord blood	blood
6	chr6:73444200-73448600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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